Ok good news folks. It did work! I've got 5.0 successfully installed on godaddy hosting. It appears when you install the dnn app they assign some features to the directories that allow it to work. As a result I would do just about everything I mentioned above and make the following changes as well.
After installing their prefab version of dnn wipe all the directories.... wow this takes a really long time! But be sure in the root directory where you want dnn installed you rename their web.config to go.config. then download and compare to what is currently in your web config file. I had to make a number of changes. The code changes I had to make are listed below (I'm going to hope this doesn't screw up the post if so please fix for me before approving)
I should say I'm setup using iis7 and it appears from the go.config that it was using asp 3.5....
<add name="ScriptModule" type="System.Web.Handlers.ScriptModule, System.Web.Extensions, Version=3.5.0.0, Culture=neutral, PublicKeyToken=31bf3856ad364e35" />
<add verb="*" path="*.asmx" validate="false" type="System.Web.Script.Services.ScriptHandlerFactory, System.Web.Extensions, Version=3.5.0.0, Culture=neutral, PublicKeyToken=31bf3856ad364e35" />
<add verb="*" path="*_AppService.axd" validate="false" type="System.Web.Script.Services.ScriptHandlerFactory, System.Web.Extensions, Version=3.5.0.0, Culture=neutral, PublicKeyToken=31bf3856ad364e35" />
<add verb="GET,HEAD" path="ScriptResource.axd" type="System.Web.Handlers.ScriptResourceHandler, System.Web.Extensions, Version=3.5.0.0, Culture=neutral, PublicKeyToken=31bf3856ad364e35" validate="false" />
<add assembly="System.Web.Extensions, Version=3.5.0.0, Culture=neutral, PublicKeyToken=31bf3856ad364e35" />
<add tagPrefix="asp" namespace="System.Web.UI" assembly="System.Web.Extensions, Version=3.5.0.0, Culture=neutral, PublicKeyToken=31bf3856ad364e35" />
add this under the other assembly binding.
<assemblyBinding xmlns="urn:schemas-microsoft-com:asm.v1">
<dependentAssembly>
<assemblyIdentity name="System.Web.Extensions" publicKeyToken="31bf3856ad364e35" />
<bindingRedirect oldVersion="1.0.0.0-1.1.0.0" newVersion="3.5.0.0" />
</dependentAssembly>
<dependentAssembly>
<assemblyIdentity name="System.Web.Extensions.Design" publicKeyToken="31bf3856ad364e35" />
<bindingRedirect oldVersion="1.0.0.0-1.1.0.0" newVersion="3.5.0.0" />
</dependentAssembly>
</assemblyBinding>
after /dotnetnuke
<system.webServer>
<!-- The system.webServer section is required for IIS7 compatability It is ignored by IIS6-->
<modules>
<add name="ScriptModule" type="System.Web.Handlers.ScriptModule, System.Web.Extensions, Version=1.0.61025.0, Culture=neutral, PublicKeyToken=31bf3856ad364e35" preCondition="managedHandler" />
<add name="Compression" type="DotNetNuke.HttpModules.Compression.CompressionModule, DotNetNuke.HttpModules" preCondition="managedHandler" />
<add name="RequestFilter" type="DotNetNuke.HttpModules.RequestFilter.RequestFilterModule, DotNetNuke.HttpModules" preCondition="managedHandler" />
<add name="UrlRewrite" type="DotNetNuke.HttpModules.UrlRewriteModule, DotNetNuke.HttpModules" preCondition="managedHandler" />
<add name="Exception" type="DotNetNuke.HttpModules.Exceptions.ExceptionModule, DotNetNuke.HttpModules" preCondition="managedHandler" />
<add name="UsersOnline" type="DotNetNuke.HttpModules.UsersOnline.UsersOnlineModule, DotNetNuke.HttpModules" preCondition="managedHandler" />
<add name="DNNMembership" type="DotNetNuke.HttpModules.Membership.MembershipModule, DotNetNuke.HttpModules" preCondition="managedHandler" />
<add name="Personalization" type="DotNetNuke.HttpModules.Personalization.PersonalizationModule, DotNetNuke.HttpModules" preCondition="managedHandler" />
</modules>
<handlers>
<add name="AJAX_ScriptResourceHandler" path="ScriptResource.axd" verb="GET,HEAD" type="System.Web.Handlers.ScriptResourceHandler, System.Web.Extensions, Version=1.0.61025.0, Culture=neutral, PublicKeyToken=31bf3856ad364e35" preCondition="integratedMode,runtimeVersionv2.0" />
<add name="AJAX_AppServiceHandler" path="*_AppService.axd" verb="*" type="System.Web.Script.Services.ScriptHandlerFactory, System.Web.Extensions, Version=1.0.61025.0, Culture=neutral, PublicKeyToken=31bf3856ad364e35" preCondition="integratedMode,runtimeVersionv2.0" />
<add name="AJAX_WebServiceHandler" path="*.asmx" verb="*" type="System.Web.Script.Services.ScriptHandlerFactory, System.Web.Extensions, Version=1.0.61025.0, Culture=neutral, PublicKeyToken=31bf3856ad364e35" preCondition="integratedMode,runtimeVersionv2.0" />
<add name="LogoffHandler*" path="Logoff.aspx" verb="*" type="DotNetNuke.Services.Authentication.LogOffHandler, DotNetNuke" preCondition="integratedMode,runtimeVersionv2.0" />
<add name="RSSJandler" path="RSS.aspx" verb="*" type="DotNetNuke.Services.Syndication.RssHandler, DotNetNuke" preCondition="integratedMode,runtimeVersionv2.0" />
<add name="LinkClickHandler" path="LinkClick.aspx" verb="*" type="DotNetNuke.Services.FileSystem.FileServerHandler, DotNetNuke" preCondition="integratedMode,runtimeVersionv2.0" />
<add name="CaptchaHandler" path="*.captcha.aspx" verb="*" type="DotNetNuke.UI.WebControls.CaptchaHandler, DotNetNuke" preCondition="integratedMode,runtimeVersionv2.0" />
</handlers>
<validation validateIntegratedModeConfiguration="false" />
</system.webServer>
<!-- Ensure validationkey is not set to AutoGenerate,IsolateApps so it correctly supports webfarms -->
<machineKey validationKey="A726D3C8758A08171507E04344EECE544DAE1DB5" decryptionKey="F6F08B6D6CE9ADD28D2F737A97A3F735B03A3F78DF9F81C4" decryption="3DES" validation="SHA1" />
Add this right before /compilation
<codeSubDirectories>
<add directoryName="HTML" />
</codeSubDirectories>
Not sure that everything is in just the right place, but hopefully that should be helpful.
If you are still struggling with your install give me a buzz! Cheap hosting and hopefully this will make it a little easier for you to get 5.0 installed on godaddy hosting.
P.S. I know nothing about security am I opening my website up to attack by posting this stuff and do I need to adjust any directories settings on godaddy to make it secure?