I had this issue and Gilles assisted me in determining that the Store Account module must be set to allow everyone access in order for PayPal to send back the response successfully. If your Store Account page or module is setup with admin only or registered user only access then the PayPal status will change but your store status will remain Awaiting Payment. Thank you again for your assistance Gilles!

Hi Jonathan,

Could you verify in your site logs if a Store Alert Message is present?
If an alert is present you should be able to discover why the payment was rejected by the IPN with the reject reason.
If not, could you verify in your PayPal backoffice if IPNs are waiting? If one or several IPN are present, verify if the IPN url is correct, it should be something like: www.yourdomain.tld/DesktopModules/Store/Providers/GatewayProviders/PayPalProvider/PayPalIPN.aspx

Could you tell me where the shipping and handling are inverted?

Gille

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We (team members) are Humans offering their knowledge, their work and their spare time FOR FREE to benefit the community. It would be so particularly appreciated that your messages begin with "Hello" and end with "Thank you" or any other form of politeness. Ask yourself what your reaction would be, if you were approached by me (a total stranger) on the street to ask you something without saying "Hello" nor "Thank you"? After several years of services dedicated to the community, I begin to be tired to read requests without any form of politeness.