The upgrade from the Gooddogs Repository to the DotNetNuke Repository was a complicated one. There were assembly name changes, namespace changes and a lot of code changes. For 'most' people, the upgrade ran fine, but some have experienced the same issue you are now experiencing, ending up with both modules still registered. The module has been updated, but the module definitions have not.

Refer to this thread for detailed instructions on how to remove the Gooddogs entries from the module defs. Your data should be fine, however, I would suggest a backup before running through the manual steps to correct your module definitions.

http://www.dotnetnuke.com/DotNetNukeProjects/ModuleRepository/Forums/tabid/905/forumid/54/threadid/18130/scope/posts/Default.aspx

ok I've got big problems here.  It seems the 3.01.10 package says it installs just fine but in reality I am missing all sorts of stuff... I cant even figure out how the module works at all rightnow... I still have the grm tables and none of the new tables...

What is my next step here?  I really need to get this working but I have data that I need to convert here...