I now have a copy of the report and it does state "DotNetNuke is presently the leading .NET-based open source CMS". Also stated in the report is that they didn't have access to some key information for DotNetNuke, like average weekly downloads. DotNetNuke also came in 4th for total number of freelance developers, 3rd in number of publications, 2nd in rate of adoption, 4th in Google page rank, Quantcast rates DNN in 4th position of highest traffic (5th at Alexa and Compete), etc.
The report also indicates that "That data showed DotNetNuke was one of the three systems with the least favorable ratio of evaluation to actual use", page 48.
DotNetNuke averaged 1 negative comment for every 4.7 positive comments. e107 averaged 1 negative comment for every 3.1 positive comments. Sample Set Range: 1.7 to 10.4. Sample Set Median: 5.8. Sample Set Mean: 5.7
It is also worth mentioning that of the four .Net-based content management systems listed and rated on the Windows Web App Gallery, DotNetNuke is ranked the lowest, lagging behind Umbraco, mojoPortal and Kentico CMS. See, http://www.microsoft.com/WEB/gallery/Categories.aspx?category=ContentMgmt.
It also looks like interest in DNN is dropping while the interest of another .Net system (Umbraco) is climbing.
"The concern here is two-fold: Not only is this trend surprising in light of the many strength factors we found in the course of our research, but it is also a source of concern given the large amount of marketing and promotional activities aimed at this product. It seems that despite all the efforts, interest in the system continues to drop." - page 69
So the "demo" of DotNetNuke needs to be improved. I wish they published the comments, that would have been very helpful. Overall, DotNetNuke is the leading .Net CMS and with some improvments could be at the top of that report in a few years or less (if we could get those negative comments to learn from and fix).